This directory contains following files

1. Interfaces by PSIMAP method (based on SCOP 1.67)
	1-1. ContactAtom_by_psimap_1_67.tar.gz: 
		All interface ATOM coordinates with their contacting partner
	1-2. Interface_by_psimap_1_67.tar.gz:
		All interface ATOM coordinate (PDB file format)

2. Interfaces by ASA method
	2-1. Domain_interfaces_by_asa_1_65.tar.gz: (based on SCOP 1.65)
		ATOM coordinates files of SCOP domains 
		Each file contains at least 10 residues
	2-2. Interface_by_asa_1_65.tar.gz: (based on PDB files used in SCOP
	     1.65)
		ATOM coordinates files of PDB entries
		Each file contains at least 10 residues

3. Interfaces by Voronoi method
	3-1. Interface_by_voronoi_1_65.tar.gz:
		ATOM coordinates files of PDB entries

4. InterPare data coverage
	4-1. intersection_of_three_method_1_65.txt:
		List of PDB entries whose domain-domain interfaces have been
		identified by ASA, PSIMAP, Voronoi, simultaneously.
	4-2. domain_non-domain_interaction_by_asa_1_65.txt:
		List of PDB entries that contain interacting interface between domain and
		non-domain (ligand, DNA, RNA, etc) by ASA method.
	4-3. only_psi_not_asa_1_65.txt:
		List of PDB entries whose domain-domain interfaces have been
		identified by PSIMAP and Voronoi but not by ASA method.
	4-4. only_asa_not_psimap_1_65.txt:
		List of PDB entries whose domin-domain interfaces have been
		identified by ASA and Voronoi, but not by PSIMAP method.
	4-5. only_voronoi_1_65.txt:
		List of PDB entries whose domin-domain interfaces have been
		identified only by Voronoi method.
	
5. Intermediate Sequence Library (ISL)
	./PDB-ISL
		./Superfamily
			./SEC_xx.mpfa.gz
		./Total
			./PDB_ISL_1e-4.mpfa
			./PDB_ISL_1e-6.mpfa
	
6. Sequence profiles from ISL using HMMer package
	./Prifile
		./Superfamily
			./x.x.x.hmm.gz
		./Total
			./hmms.hmm.gz

7. ETC
	7-1. interface_aa_compo_20050215.xls:
		Amino acid composition in the interface area
		This data is based on Interfaces derived from ASA method
	7-2. nmrlist.txt:
		List of PDB entries from NMR experiment used in Interpare.
	7-3. readme.txt:
		README of this directory
	

Last modified in 20050505 by Sungsam Gong <ssgong@kaist.ac.kr>